This is the reply I got from Van's
"What you see in the HS-609PP is just surface imperfections in the material, not cracks. It is OK to polish them out if you wish, but don't go more than .015" deep. They don't effect the strength of the structure at all, so you can leave them alone."
I have polished them out so it looks like I am good to go. I just needed to be more agressive with my polishing tool choice.
It is a good feeling though to have heard others agree that it didn't look right. At least I am not being paranoid. (At least not yet)
Eric